4JVP

Three dimensional structure of broadly neutralizing anti - Hepatitis C virus (HCV) glycoprotein E2 alpaca nanobody D03


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.182 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

An alpaca nanobody inhibits hepatitis C virus entry and cell-to-cell transmission.

Tarr, A.W.Lafaye, P.Meredith, L.Damier-Piolle, L.Urbanowicz, R.A.Meola, A.Jestin, J.L.Brown, R.J.McKeating, J.A.Rey, F.A.Ball, J.K.Krey, T.

(2013) Hepatology 58: 932-939


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Anti-HCV E2 alpaca nanobody D03
A, B
143N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.182 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 52.806α = 90.00
b = 52.806β = 90.00
c = 182.471γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
BUSTERrefinement
XDSdata reduction
XDSdata scaling
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2013-03-26 
  • Released Date: 2013-04-24 
  • Deposition Author(s): Krey, T., Rey, F.A.

Revision History 

  • Version 1.0: 2013-04-24
    Type: Initial release
  • Version 1.1: 2013-10-23
    Type: Database references