4JQ9

Dihydrolipoyl dehydrogenase of Escherichia coli pyruvate dehydrogenase complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.179 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Dihydrolipoyl dehydrogenase of Escherichia coli pyruvate dehydrogenase complex

Tietzel, M.Meyer, D.Schroeder-Tittmann, K.Neumann, P.Ficner, R.Tittmann, K.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Dihydrolipoyl dehydrogenaseA, B, C, D, E, F474Escherichia coliMutation(s): 0 
Gene Names: 
lpdAlpdBN17_45381ECs0120LF82_1218lpd_1lpdA_2A6581_11810A6592_03275A6V01_20430A9819_00510A9P13_21455A9R57_04135A9X72_20695AC067_04375AC789_1c01150ACN81_28825ACU57_15945ACU90_26805AJ318_03365AM270_11935AM446_23040AM464_17360AM465_26185AMK83_01720AML07_23200AML35_12830APT94_27535APU18_02300APZ14_11375ARC77_19920AU473_26230AUQ13_07765AUS26_22880AW059_09555AW106_08465AWB10_21305AWF59_004050AWG78_007355AWG90_002080AWP75_13180AZZ83_003925B6V57_00655B7C53_01645B9M99_18730B9N33_07100B9T59_07805BANRA_00495BANRA_00587BANRA_02325BANRA_03287BB545_20610BE963_14555BEN53_02790BER14_08070BFD68_22095BHF03_16275BHF46_08145BHJ80_04160BHS81_00365BHS87_00510BIZ41_09865BJJ90_21630BK248_21140BK292_13405BK296_02795BK334_15285BK375_04900BK383_14290BMA87_13000BMT49_01910BMT91_01630BOH76_19415BON65_09145BON69_06640BON71_00655BON72_09085BON75_16855BON76_15175BON83_25135BON86_13280BON87_26970BON91_07245BON92_02470BON94_26845BON95_00210BON96_17495BTQ04_14115BTQ06_06200BUE81_03840BvCms12BK_00086BvCms2454_01624BvCms28BK_01162BvCms35BK_02196BvCmsC61A_04312BvCmsHHP001_03340BvCmsHHP019_03695BvCmsKKP061_01687BvCmsKSNP073_00785BvCmsKSNP081_00555BvCmsKSNP120_00156BvCmsKSP011_02250BvCmsKSP024_03057BvCmsKSP026_04763BvCmsKSP045_01903BvCmsKSP058_03821BvCmsKSP067_02078BvCmsNSNP036_02436BvCmsNSP006_04008BvCmsNSP007_03818BvCmsNSP047_03328BvCmsNSP072_03722BvCmsOUP014_04149BvCmsSINP022_00274BvCmsSIP019_01078BvCmsSIP044_04890BVL39_02475BW690_21905BWP17_12210BXT93_12600BZL31_13280BZL69_25130C2M16_10515C2U48_09900C4K41_15690C4M78_19675C5N07_08285C5P01_08635C5P44_14600C6669_04550C6B13_04620C7235_20520C7B02_09450C7B06_05590C7B07_04555C7B08_09975C7B18_05585C9098_16375C9114_07285C9141_10990C9160_13845C9162_08015C9201_10510C9306_16275C9E25_07180C9E67_25500C9Z03_02735C9Z23_08130C9Z28_04950C9Z29_10635C9Z37_13860C9Z39_04720C9Z43_09255C9Z68_04515C9Z69_05080C9Z70_08380C9Z89_09660CA593_03160CCZ14_16230CCZ17_20170CDC27_24400CDL37_06960CF006_13725CG692_01125CI641_016225CI693_14800CI694_08425CIG45_07280CJU63_00615CJU64_00590CMR93_01980CO706_22770COD30_15065COD46_06345CQP61_22355CR538_20930CR539_04640CRD98_07315CRE06_00460CRM83_15380CRT43_00690CRX46_05295CSB64_09890CT146_12395CUB99_08315CVH05_24770CWM24_06565CWS33_09330D0X26_09710D2184_08880D2185_13135D2188_12505D3821_05935D3M98_09235D3O91_02895D3P01_07255D3P02_17275D3Y67_07365D4011_00460D4023_14935D4074_00075D4628_07080D4636_06685D4638_02075D4660_00465D4718_00460D4L91_00465D4M06_01740D4U49_01600D4U85_02630D4V08_18765D5H35_11285D5I97_00465D6004_10015D6C36_00470D6D43_00465D6T60_04310D6T98_04435D6W00_08180D6X36_12115D6X63_08295D6X76_10075D7K33_03685D7K63_00440D7K66_11890D7W70_13285D7Y10_00430D7Z75_07690D8Y65_02165D9610_09725D9C99_10070D9D20_09780D9D31_08265D9D33_03670D9D43_02570D9D44_07050D9D94_08990D9E13_16595D9E19_08765D9E34_01370D9E35_14795D9E49_02405D9E73_02750D9F87_17505D9G11_19375D9G29_02695D9G42_07850D9G48_18925D9G69_06100D9G95_06415D9H10_00430D9H36_11835D9H53_04625D9H68_06265D9H70_04620D9H94_05400D9I18_13155D9I20_08375D9I87_01905D9I88_06700D9I97_04075D9J03_00435D9J11_09695D9J44_14340D9J46_03160D9J52_04830D9J58_13720D9J60_02340D9J63_15580D9J78_12645D9K48_09705D9K54_16485D9L89_00430D9L99_06195D9S45_08880D9X77_00070D9X97_00430D9Z28_05665DAH18_21875DAH26_11505DAH30_10900DAH32_14820DAH34_04480DAH37_05520DAH43_03735DB359_13250DBQ99_21650DD762_00810DEN86_04355DEN89_20000DEN97_04715DEO04_16815DEO19_04500DEO20_19430DIV22_05980DJ487_06300DJ492_02775DJ503_00605DK132_00420DL251_18470DL257_01925DL292_03370DL326_07815DL455_01910DL479_11575DL530_05955DL545_20705DL705_12250DL979_07280DLT82_10955DLU50_09425DLU67_01090DLU82_08385DLW60_08940DLW88_04045DLX38_00100DLX40_11345DLY41_10175DLY44_09065DM102_04305DM129_16795DM155_08515DM267_09935DM272_00440DM280_04960DM296_03955DM382_05365DM820_06815DM962_03540DM973_00415DMC44_09150DMI04_00465DMI53_01805DMO02_00460DMY83_01945DMZ50_03815DN627_10530DN660_06690DN700_05465DN703_10415DN808_21540DNB37_01725DNC98_11570DND16_05100DND79_06290DNI21_01955DNJ62_00460DNK12_00465DNQ45_23945DNR35_01740DNR41_13480DNW42_09475DNX19_16585DNX30_02560DOE35_00460DOM23_00440DOS18_01950DOT81_00460DOU81_00460DOY22_00465DOY56_00465DOY61_10795DOY67_02155DP258_09640DP265_17575DP277_24120DQE91_03515DQF36_06300DQF57_05955DQF71_09805DQF72_18270DQG35_00465DQO13_06540DQP61_02640DRP48_00465DRW19_05215DS143_09395DS721_00460DS732_05485DS966_13190DT034_05630DTL43_06215DTL90_09450DTM45_12355DU309_06405DU321_03385DU333_06210DVB38_09460DW236_10335DWB25_20610DXT69_01760DXT71_01615DXT73_11400DXX80_016875E0I42_17545E0K84_13115E0L04_16750E0L12_04790E2112_01505E2114_00010E2115_19510E2119_07680E2127_05645E2128_01075E2129_03130E2135_03415E2148_13795E2855_00112E2863_00111E4K55_07235E4K60_04325E4K61_10620E5P22_00380E5P28_13290E5P37_11760E5S42_11050E5S46_04275E5S47_12060E5S56_11310E5S58_05870E5S61_04145EA159_18840EA167_19885EA189_13005EA191_20185EA198_08915EA200_20885EA203_18210EA213_09465EA214_03745EA218_05365EA222_15820EA223_05845EA225_05340EA231_02280EA232_18265EA233_03440EA242_20675EA245_19935EA250_26040EA410_05140EA429_13990EA434_02800EA435_20660EAI42_10670EAI46_10075EAI52_02135EAM59_13995EAN70_14445EAN77_09720EAX79_05815EB476_19850EB509_04825EB510_04830EB515_00430EBA46_02180EBA84_00430EBJ06_10540EBM08_07235EC3234A_2c00980EC3426_00867EC382_02690EC95NR1_04297ECONIH1_00625ECTO124_04099ECTO6_03951ED225_10715ED307_12340ED600_04915ED607_02890ED611_09900ED648_00445ED903_06745ED944_00430EEA45_04775EEP23_00440EF082_11035EF173_00430EG075_06875EG599_10300EG796_03065EG808_12155EGC26_04325EGT48_19965EGU87_00430EH186_01700EH412_12160EHD45_00430EHD63_00430EHD79_11000EHJ36_12025EHJ66_10345EHV81_02000EHV90_08730EHW09_07045EHX09_00430EI021_04610EI028_09765EI032_09190EI041_03430EIA08_06050EIA21_00430EIZ93_07465EJ366_18455EJC75_22460EKI52_10795EL75_3648EL79_3758ELT17_00985ELT20_04200ELT22_08590ELT23_12440ELT33_16130ELT48_11895ELT49_10700ELT58_18550ELU82_17060ELU85_11450ELU96_19990ELV05_06735ELV08_09290ELV13_01870ELV15_19415ELV22_18665ELV24_20315ELV28_04445ELX56_21920ELX70_03070ELX76_11860ELX79_16825ELX83_18330ELY05_12780ELY23_07050ELY24_21800ELY41_06900ELY48_07190ELY50_01535EO241_11535EPS76_20815EPS91_04630EPS94_13000EPT01_02865EPU41_00675EQ820_08630EQ825_03585EQ830_02170ERL57_05605ERS085365_01007ERS085366_00664ERS085374_01748ERS085379_00590ERS085383_01230ERS085386_01597ERS085404_00762ERS085406_00517ERS085416_01605ERS139211_00726ERS150873_01058ERS150876_00119EST51_20365EVY14_06065EWK56_14625EXM29_16020ExPECSC019_03493ExPECSC038_04042ExPECSC065_04140EXX06_08550EXX13_05050EXX23_14400EXX24_10635EXX53_06700EXX55_08015EXX71_12600EXX78_15140EXX87_03070EYD11_18810EYX99_21220EYY27_25170EYY34_23150EYY78_13105F1E13_08125F1E19_07475F7F00_12960F7F11_02345F7F18_06900F7F23_13190F7F26_13805F7F29_07905F7G01_02385F7G03_01195F9059_11850F9Z74_07850FAF34_008235FE846_01975FKO60_12605FNJ67_21750FNJ69_22115FNJ83_02080FQ022_03355FQ915_07690FQR64_18950FQU83_22145FQZ46_06135FV293_03165FV295_05440FV438_03475FVB16_06925FZ043_03750GFU40_19250GFU45_18505GFU47_19150GHR40_00855GII67_17450GII91_19780GIY13_04280GIY19_11400GJ11_00625GJ638_03125GJD97_23255GKE15_05455GKE22_02440GKE24_06515GKE26_05455GKE29_09055GKE31_05420GKE39_04185GKE46_02465GKE58_05375GKE60_05430GKE64_02465GKE77_05800GKE87_12315GKE92_14440GKE93_05455GKF00_18135GKF03_21165GKF28_02950GKF34_02965GKF47_02965GKF74_00170GKF86_00925GKF89_02220GKG08_18635GKG09_18830GKG11_18460GKG12_02385GKG22_18395GKG29_18660GN312_13765GNZ00_06260GNZ02_07645GNZ03_07565GP654_11545GP661_02710GP664_08220GP666_05335GP700_07360GP712_03810GP720_09845GP727_05695GP912_06025GP935_09590GP946_16170GP950_20990GQE22_02360GQE30_01095GQE34_09090GQE42_19560GQE47_20485GQE51_02075GQE58_17535GQE64_01660GQE68_05325GQE88_09525GQE93_18260GQM09_06830GQM13_12360GQM17_05455GQN16_14730GQS26_13205GRW42_09700GRW80_09200HmCms169_00304HmCms184_03963HmCmsJML074_01693HmCmsJML079_03629HmCmsJML146_01805HmCmsJML236_01562HW43_04340MS6198_01300MS8345_00116NCTC10089_04136NCTC10764_05833NCTC11126_03548NCTC11181_01433NCTC11341_03522NCTC12650_04389NCTC12950_04479NCTC13127_05514NCTC13148_05127NCTC13846_03932NCTC7927_04561NCTC8450_01050NCTC8500_04612NCTC8621_04260NCTC8622_02588NCTC8959_04784NCTC8960_01616NCTC9007_00514NCTC9036_04080NCTC9044_03124NCTC9045_04781NCTC9050_02079NCTC9055_01019NCTC9058_02741NCTC9062_04161NCTC9077_05167NCTC9081_02080NCTC9111_04318NCTC9117_05120NCTC9119_04320NCTC9434_02557NCTC9701_04430NCTC9703_03488NCTC9777_00527NCTC9962_05765PGD_03755PU06_22300RG28_04170RK56_013365RX35_04851SAMEA3472043_02474SAMEA3472044_01982SAMEA3472047_00262SAMEA3472055_02574SAMEA3472056_01026SAMEA3472070_02447SAMEA3472080_02185SAMEA3472108_03256SAMEA3472110_00404SAMEA3472112_00236SAMEA3472114_03673SAMEA3472147_00327SAMEA3484427_01306SAMEA3484429_01175SAMEA3484434_01078SAMEA3485101_01053SAMEA3752372_00236SAMEA3752553_02947SAMEA3752557_00820SAMEA3752559_03765SAMEA3753064_03317SAMEA3753097_01873SAMEA3753290_00340SAMEA3753300_01933SK85_00112SY51_00685U12A_00122U14A_00121UC41_07165UN86_07445UN91_10850WQ89_09290WR15_02065YDC107_3344

EC: 1.8.1.4
Find proteins for C3TQA2 (Escherichia coli)
Explore C3TQA2 
Go to UniProtKB:  C3TQA2
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

Download CCD File 
A, B, C, D, E, F
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
SO4
Query on SO4

Download CCD File 
A, B, C, D, E, F
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download CCD File 
A, B, C, D, E, F
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
IMD
Query on IMD

Download CCD File 
A, C, E
IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
 Ligand Interaction
CL
Query on CL

Download CCD File 
A, C, E, F
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.17 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.179 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 111.68α = 90
b = 129.32β = 90
c = 258.34γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
MxCuBEdata collection
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-04-02
    Type: Initial release
  • Version 1.1: 2019-09-04
    Changes: Advisory, Data collection