4JNX

Crystal structure of RNA silencing suppressor p19 complexed with double-helical RNA 20mer pG(CUG)6C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Procrustean bed of RNA silencing suppression

Katorcha, E.Tamjar, J.Popov, A.N.Malinina, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RNA silencing suppressor p19
A, D
127Tomato bushy stunt virus (strain Ja9)N/A
Find proteins for P69517 (Tomato bushy stunt virus (strain Ja9))
Go to UniProtKB:  P69517
Entity ID: 2
MoleculeChainsLengthOrganism
5'-R(P*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*C)-3'B,G20N/A
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
MG
Query on MG

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Download CCD File 
B, D
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.196 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 89.917α = 90.00
b = 89.917β = 90.00
c = 148.353γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
REFMACrefinement
ADSCdata collection
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
DENZOdata reduction
REFMACphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-03-19
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description