4JMY

Crystal structure of HCV NS3/NS4A protease complexed with DDIVPC peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.216 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Importance of the peptide scaffold of drugs that target the hepatitis C virus NS3 protease and its crucial bioactive conformation and dynamic factors.

LaPlante, S.Lemke, C.T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polyprotein
A, B
186Hepatitis C virus genotype 2Mutation(s): 0 
Find proteins for Q81817 (Hepatitis C virus genotype 2)
Go to UniProtKB:  Q81817
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HCV non-structural protein 4A
C, D
17Hepatitis C virus genotype 1b (isolate Japanese)Mutation(s): 0 
Find proteins for P26662 (Hepatitis C virus genotype 1b (isolate Japanese))
Go to UniProtKB:  P26662
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
substrate peptide
E, F
6N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download SDF File 
Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.216 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 94.123α = 90.00
b = 94.123β = 90.00
c = 83.236γ = 120.00
Software Package:
Software NamePurpose
d*TREKdata reduction
PHENIXrefinement
MAR345dtbdata collection
PHENIXphasing
d*TREKdata scaling
PHENIXmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2013-03-14 
  • Released Date: 2013-10-30 
  • Deposition Author(s): Lemke, C.T.

Revision History 

  • Version 1.0: 2013-10-30
    Type: Initial release