4JMS

Crystal structure of Cytochrome C Peroxidase W191G-Gateless in complex with imidazo[1,2-a]pyridin-5-amine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.166 
  • R-Value Work: 0.135 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Docking to a water-filled model binding site in Cytochrome c Peroxidase

Barelier, S.Boyce, S.E.Fish, I.Fischer, M.Goodin, D.B.Shoichet, B.K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cytochrome c peroxidase
A
289Saccharomyces cerevisiae (strain RM11-1a)Mutation(s): 2 
EC: 1.11.1.-
Find proteins for B3LRE1 (Saccharomyces cerevisiae (strain RM11-1a))
Go to UniProtKB:  B3LRE1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
1LX
Query on 1LX

Download SDF File 
Download CCD File 
A
imidazo[1,2-a]pyridin-5-amine
C7 H7 N3
XSNBOUDHWWROII-UHFFFAOYSA-N
 Ligand Interaction
HEM
Query on HEM

Download SDF File 
Download CCD File 
A
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.166 
  • R-Value Work: 0.135 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 106.120α = 90.00
b = 75.070β = 90.00
c = 51.170γ = 90.00
Software Package:
Software NamePurpose
ADSCdata collection
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACrefinement
XDSdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-05-01
    Type: Initial release