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Download EndnoteCrystal structure of a hypothetical protein (BDI_0842) from Parabacteroides distasonis ATCC 8503 at 1.40 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
4JM1
Crystal structure of a protein with alpha-lytic protease prodomain-like fold (BDI_0842) from Parabacteroides distasonis ATCC 8503 at 1.40 A resolution
- DOI: 10.2210/pdb4JM1/pdb
- Classification: Structural Genomics Unknown Function
- Organism(s): Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)
- Expression System: Escherichia coli
- Deposited: 2013-03-13 Released: 2013-04-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.4 Å
- R-Value Free: 0.168
- R-Value Work: 0.129
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| hypothetical protein | A | 84 | Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) | Mutation(s): 0 |
Find proteins for A6LA98 (Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)) Go to UniProtKB: A6LA98 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | A | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.4 Å
- R-Value Free: 0.168
- R-Value Work: 0.129
- Space Group: P 21 21 21
- Diffraction Data DOI:
10.18430/M34JM1 Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 37.405 | α = 90.00 |
| b = 45.673 | β = 90.00 |
| c = 48.105 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| SHELX | phasing |
| REFMAC | refinement |
| SHELXD | phasing |
| PDB_EXTRACT | data extraction |
| SHARP | phasing |
| MolProbity | model building |
| XSCALE | data scaling |
| XDS | data reduction |
Entry History
Deposition Data
- Deposited Date: 2013-03-13
- Released Date: 2013-04-03
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2013-04-03
Type: Initial release - Version 1.1: 2014-12-24
Type: Structure summary - Version 1.2: 2017-11-15
Type: Refinement description - Version 1.3: 2018-01-24
Type: Database references
