4JJQ

Crystal structure of usp7-ntd with an e2 enzyme

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history. 

Literature

Ubiquitin-specific protease 7 is a regulator of ubiquitin-conjugating enzyme UbE2E1.

Sarkari, F., Wheaton, K., La Delfa, A., Mohamed, M., Shaikh, F., Khatun, R., Arrowsmith, C.H., Frappier, L., Saridakis, V., Sheng, Y.

(2013) J. Biol. Chem. 288: 16975-16985


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin carboxyl-terminal hydrolase 7
A
159Homo sapiensMutation(s): 1 
Gene Names: USP7 (HAUSP)
EC: 3.4.19.12
Find proteins for Q93009 (Homo sapiens)
Go to Gene View: USP7
Go to UniProtKB:  Q93009
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-conjugating enzyme E2 E1
B
10Homo sapiensMutation(s): 0 
Gene Names: UBE2E1 (UBCH6)
EC: 2.3.2.23
Find proteins for P51965 (Homo sapiens)
Go to Gene View: UBE2E1
Go to UniProtKB:  P51965
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.197 
  • Space Group: P 41
Unit Cell:
Length (Å)Angle (°)
a = 69.901α = 90.00
b = 69.901β = 90.00
c = 45.733γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
CNSphasing
HKL-2000data reduction
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

  • Deposited Date: 2013-03-08 
  • Released Date: 2013-05-01 
  • Deposition Author(s): Saridakis, V.

Revision History 

  • Version 1.0: 2013-05-01
    Type: Initial release
  • Version 1.1: 2018-04-18
    Type: Data collection, Database references