Download MendeleyCrystal structure of the ABL-SH3 domain complexed with the designed high-affinity peptide ligand P7
Camara-Artigas, A.To be published.
4J9G
Crystal structure of the ABL-SH3 domain complexed with the designed high-affinity peptide ligand P7 at pH7
- PDB DOI: https://doi.org/10.2210/pdb4J9G/pdb
- Classification: Transferase/unknown function
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-02-16 Released: 2014-01-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.244
- R-Value Work: 0.206
- R-Value Observed: 0.208
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tyrosine-protein kinase ABL1 | A, C, E | 63 | Homo sapiens | Mutation(s): 0 Gene Names: ABL, ABL1, JTK7 EC: 2.7.10.2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00519 (Homo sapiens) Explore P00519 Go to UniProtKB: P00519 | |||||
PHAROS: P00519 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00519 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| P7 | B, D, F | 11 | N/A | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | G [auth E] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| GOL Query on GOL | H [auth E] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.244
- R-Value Work: 0.206
- R-Value Observed: 0.208
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 86.309 | α = 90 |
| b = 86.309 | β = 90 |
| c = 45.236 | γ = 120 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| ADSC | data collection |
| XDS | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2014-01-29 Deposition Author(s): Camara-Artigas, A.
Revision History (Full details and data files)
- Version 1.0: 2014-01-29
Type: Initial release
