4J5V

Crystal structure of p19 in complex with double-helical RNA 19mer p(CAG)3C(CCG)3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural insights into CNG-repetitive RNAs associated with human Trinucleotide Repeat Expansion Diseases (TREDs)

Tamjar, J.Katorcha, E.Cabo, A.Delgado, S.Popov, A.N.Malinina, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RNA silencing suppressor p19
A
127Tomato bushy stunt virus (strain Ja9)N/A
Find proteins for P69517 (Tomato bushy stunt virus (strain Ja9))
Go to UniProtKB:  P69517
Entity ID: 2
MoleculeChainsLengthOrganism
5'-R(P*CP*AP*GP*CP*AP*GP*CP*AP*GP*CP*CP*CP*GP*CP*CP*GP*CP*CP*G)-3'B19N/A
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.172 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 90.219α = 90.00
b = 90.219β = 90.00
c = 148.039γ = 120.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACphasing
PDB_EXTRACTdata extraction
DENZOdata reduction
REFMACrefinement
HKL-2000data reduction
ADSCdata collection
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-02-12
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description