4J29 | pdb_00004j29

Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR258.

PDB DOI: https://doi.org/10.2210/pdb4J29/pdb

Classification: Structural Genomics, Unknown Function
Organism(s): synthetic construct
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2013-02-04 Released: 2013-03-13
Deposition Author(s): Vorobiev, S., Su, M., Koga, R., Seetharaman, J., Koga, N., Mao, L., Xiao, R., Kohan, E., Castelllanos, J., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.268 (Depositor), 0.269 (DCC)
R-Value Work:
0.237 (Depositor), 0.242 (DCC)
R-Value Observed:
0.239 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Engineered Protein OR258.

Vorobiev, S., Su, M., Koga, R., Seetharaman, J., Koga, N., Mao, L., Xiao, R., Kohan, E., Castelllanos, J., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 15.86 kDa
Atom Count: 1,055
Modeled Residue Count: 127
Deposited Residue Count: 134
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Engineered Protein OR258	A	134	synthetic construct	Mutation(s): 0

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.268 (Depositor), 0.269 (DCC)
R-Value Work: 0.237 (Depositor), 0.242 (DCC)
R-Value Observed: 0.239 (Depositor)

Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.558	α = 90
b = 67.558	β = 90
c = 48.907	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
XDS	data reduction
XSCALE	data scaling
SHELXDE	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2013-03-13

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2013-03-13
Type: Initial release
Version 1.1: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary