4IYB

Macrolepiota procera ricin B-like lectin (MPL) in complex with galactose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.145 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Macrolepiota procera ricin B-like lectin (MPL) in complex with galactose

Renko, M.Zurga, S.Sabotic, J.Pohleven, J.Kos, J.Turk, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ricin B-like lectin
A, B
140Macrolepiota proceraMutation(s): 0 
Find proteins for F6KMV5 (Macrolepiota procera)
Go to UniProtKB:  F6KMV5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
GAL
Query on GAL

Download SDF File 
Download CCD File 
A
BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.145 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 63.596α = 90.00
b = 63.596β = 90.00
c = 155.831γ = 120.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
HKL-2000data scaling
REFMACrefinement
HKL-2000data reduction
DENZOdata reduction
PDB_EXTRACTdata extraction
PHASERphasing
HKL-2000data collection
MAINrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-11-20
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Advisory, Refinement description