4IXD

X-ray structure of lfa-1 i-domain in complex with ibe-667 at 1.8a resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Identification and x-ray structure based investigation of an ICAM-1 binding enhancing small molecule activator of LFA-1

Hintersteiner, M.Kallen, J.Schmied, M.Jung, T.Graf, C.Mudd, G.Gstach, H.Auer, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Integrin alpha-L
A
188Homo sapiensMutation(s): 0 
Gene Names: ITGAL (CD11A)
Find proteins for P20701 (Homo sapiens)
Go to Gene View: ITGAL
Go to UniProtKB:  P20701
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
1HV
Query on 1HV

Download SDF File 
Download CCD File 
A
4-(3-{4-[(3-aminopropyl)carbamoyl]phenyl}-1H-indazol-1-yl)-N-methylbenzamide
C25 H25 N5 O2
CGHZINICBUGRGZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.172 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 45.300α = 90.00
b = 65.900β = 90.00
c = 133.600γ = 90.00
Software Package:
Software NamePurpose
X-PLORmodel building
HKL-2000data reduction
SCALEPACKdata scaling
X-PLORphasing
REFMACrefinement
MAR345dtbdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2013-01-25 
  • Released Date: 2014-01-29 
  • Deposition Author(s): Kallen, J.

Revision History 

  • Version 1.0: 2014-01-29
    Type: Initial release