Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 52100.06 
• Atom Count: 3417 
• Residue Count: 458 
• Unique protein chains: 1

4ISE

Human glucokinase in complex with novel activator (2S)-3-cyclohexyl-2-(6-fluoro-4-oxoquinazolin-3(4H)-yl)-N-(1,3-thiazol-2-yl)propanamide

• DOI: 10.2210/pdb4ISE/pdb

• Classification: TRANSFERASE/TRANSFERASE ACTIVATOR
• Organism(s): Homo sapiens
• Expression System: Escherichia coli DH5[alpha]


• Deposited: 2013-01-16 Released: 2013-03-20 
• Deposition Author(s): Hosfield, D., Skene, R.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.78 Å
• R-Value Free: 0.227 
• R-Value Work: 0.199 

Literature

Design, synthesis and SAR of novel glucokinase activators.

Cheruvallath, Z.S., Gwaltney, S.L., Sabat, M., Tang, M., Feng, J., Wang, H., Miura, J., Guntupalli, P., Jennings, A., Hosfield, D., Lee, B., Wu, Y.

(2013) Bioorg.Med.Chem.Lett. 23: 2166-2171

• PubMed: 23434031 
• DOI: 10.1016/j.bmcl.2013.01.093
• Primary Citation of Related Structures:  
  4ISG, 4ISF


• PubMed Abstract: 
  

Guided by co-crystal structures of compounds 15, 22 and 30, an SBDD approach led to the discovery of the 6-methyl pyridone series as a novel class of GKAs that potently activate GK in enzyme and cell assays. Anti-diabetic OGTT efficacy was demonstrated with 54 in a mouse model of type 2 diabetes.

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Organizational Affiliation: 

Takeda California, 10410 Science Center Drive, San Diego, CA 92121, USA.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Glucokinase	A	458	Homo sapiens	Mutation(s): 0  Gene Names: GCK EC: 2.7.1.2
Find proteins for P35557 (Homo sapiens) Go to Gene View: GCK Go to UniProtKB:  P35557

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
1FW	A	(2S)-3-cyclohexyl-2-(6-fluoro-4-oxoquinazolin-3(4H)-yl)-N-(1,3-thiazol-2-yl)propanamide C20 H21 F N4 O2 S HETBALZVBPDEQB-KRWDZBQOSA-N
IOD	A	IODIDE ION I XMBWDFGMSWQBCA-UHFFFAOYSA-M
GLC	A	ALPHA-D-GLUCOSE C6 H12 O6 WQZGKKKJIJFFOK-DVKNGEFBSA-N

External Ligand Annotations
ID	Binding Affinity (Sequence Identity %)
1FW	EC50: 4000 nM (100) BINDINGDB

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.78 Å
• R-Value Free: 0.227 
• R-Value Work: 0.199 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 49.483	α = 90.00
b = 77.646	β = 90.00
c = 119.274	γ = 90.00

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data scaling
MOLREP	phasing
HKL-2000	data reduction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2013-01-16 
• Released Date: 2013-03-20 
• Deposition Author(s): Hosfield, D., Skene, R.J.

Revision History 

• Version 1.0: 2013-03-20
  Type: Initial release
• Version 1.1: 2013-04-03
  Type: Database references