4IQG

Crystal structure of BPRO0239 oxidoreductase from Polaromonas sp. JS666 in NADP bound form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.148 
  • R-Value Observed: 0.150 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Short-chain dehydrogenase/reductase SDRB [auth A], C [auth B], A [auth C], D271Polaromonas sp. JS666Mutation(s): 0 
Gene Names: Bpro_0239
UniProt
Find proteins for Q12GY8 (Polaromonas sp. (strain JS666 / ATCC BAA-500))
Explore Q12GY8 
Go to UniProtKB:  Q12GY8
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAP
Query on NAP

Download Ideal Coordinates CCD File 
H [auth C], L [auth A], M [auth B], P [auth D]NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
 Ligand Interaction
PEG
Query on PEG

Download Ideal Coordinates CCD File 
Q [auth D]DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
K [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
FMT
Query on FMT

Download Ideal Coordinates CCD File 
E [auth C] , F [auth C] , G [auth C] , I [auth A] , J [auth A] , N [auth B] , O [auth B] , R [auth D] , 
E [auth C],  F [auth C],  G [auth C],  I [auth A],  J [auth A],  N [auth B],  O [auth B],  R [auth D],  S [auth D]
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A [auth C], B [auth A], C [auth B], DL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.142α = 90
b = 97.71β = 97.32
c = 70.665γ = 90
Software Package:
Software NamePurpose
HKL-3000phasing
MOLREPphasing
REFMACrefinement
Cootmodel building
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2013-01-30
    Type: Initial release
  • Version 1.1: 2017-11-15
    Changes: Refinement description