4IM7

Crystal structure of fructuronate reductase (ydfI) from E. coli CFT073 (EFI TARGET EFI-506389) complexed with NADH and D-mannonate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.148 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of fructuronate reductase (ydfI) from E. coli CFT073 (EFI TARGET EFI-506389) complexed with NADH and D-mannonate

Wichelecki, S.Lukk, T.Imker, H.J.Nair, S.K.Gerlt, J.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hypothetical oxidoreductase ydfI
A
506Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)EC: 1.-.-.-
Find proteins for A0A0H2V7F2 (Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC))
Go to UniProtKB:  A0A0H2V7F2
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
NAI
Query on NAI

Download SDF File 
Download CCD File 
A
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
 Ligand Interaction
CS2
Query on CS2

Download SDF File 
Download CCD File 
A
D-MANNONIC ACID
D-MANNONATE
C6 H12 O7
RGHNJXZEOKUKBD-MBMOQRBOSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.148 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 92.490α = 90.00
b = 92.490β = 90.00
c = 136.000γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data collection
PHENIXrefinement
PHASERphasing
XSCALEdata scaling
XDSdata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-23
    Type: Initial release
  • Version 1.1: 2014-11-12
    Type: Structure summary