4IKP

Crystal structure of coactivator-associated arginine methyltransferase 1 with methylenesinefungin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.204 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of coactivator-associated arginine methyltransferase 1 with methylenesinefungin

Dombrovski, L.Dong, A.He, H.Ibanez, G.Wernimont, A.Zheng, W.Bountra, C.Arrowsmith, C.H.Edwards, A.M.Brown, P.J.Min, J.Luo, M.Wu, H.Structural Genomics Consortium (SGC)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Histone-arginine methyltransferase CARM1A, B, C, D341Homo sapiensMutation(s): 0 
Gene Names: CARM1PRMT4
EC: 2.1.1 (PDB Primary Data), 2.1.1.125 (PDB Primary Data), 2.1.1.319 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q86X55 (Homo sapiens)
Explore Q86X55 
Go to UniProtKB:  Q86X55
PHAROS:  Q86X55
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
4IK (Subject of Investigation/LOI)
Query on 4IK

Download Ideal Coordinates CCD File 
E [auth A], GA [auth C], Q [auth B], TA [auth D](2S,5S)-2,6-diamino-5-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}hexanoic acid
C16 H25 N7 O5
CPUNUFGYWFHFOF-TVDBPQCTSA-N
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
F [auth A], HA [auth C], IA [auth C], JA [auth C], UA [auth D]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

Download Ideal Coordinates CCD File 
AA [auth B] , AB [auth D] , BA [auth B] , CA [auth B] , DA [auth B] , EA [auth B] , FA [auth B] , G [auth A] , 
AA [auth B],  AB [auth D],  BA [auth B],  CA [auth B],  DA [auth B],  EA [auth B],  FA [auth B],  G [auth A],  H [auth A],  I [auth A],  J [auth A],  K [auth A],  KA [auth C],  L [auth A],  LA [auth C],  M [auth A],  MA [auth C],  N [auth A],  NA [auth C],  O [auth A],  OA [auth C],  P [auth A],  PA [auth C],  QA [auth C],  R [auth B],  RA [auth C],  S [auth B],  SA [auth C],  T [auth B],  U [auth B],  V [auth B],  VA [auth D],  W [auth B],  WA [auth D],  X [auth B],  XA [auth D],  Y [auth B],  YA [auth D],  Z [auth B],  ZA [auth D]
UNKNOWN ATOM OR ION
X
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.204 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 75.06α = 90
b = 98.844β = 90
c = 206.628γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-02-13
    Type: Initial release
  • Version 1.1: 2013-05-15
    Changes: Structure summary
  • Version 1.2: 2018-01-24
    Changes: Database references, Source and taxonomy, Structure summary
  • Version 1.3: 2018-04-18
    Changes: Data collection, Source and taxonomy