4IKP

Crystal structure of coactivator-associated arginine methyltransferase 1 with methylenesinefungin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of coactivator-associated arginine methyltransferase 1 with methylenesinefungin

Dombrovski, L.Dong, A.He, H.Ibanez, G.Wernimont, A.Zheng, W.Bountra, C.Arrowsmith, C.H.Edwards, A.M.Brown, P.J.Min, J.Luo, M.Wu, H.Structural Genomics Consortium (SGC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histone-arginine methyltransferase CARM1
A, B, C, D
341Homo sapiensMutation(s): 0 
Gene Names: CARM1 (PRMT4)
EC: 2.1.1.319
Find proteins for Q86X55 (Homo sapiens)
Go to Gene View: CARM1
Go to UniProtKB:  Q86X55
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

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Download CCD File 
A, C, D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

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Download CCD File 
A, B, C, D
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
4IK
Query on 4IK

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Download CCD File 
A, B, C, D
(2S,5S)-2,6-diamino-5-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}hexanoic acid
C16 H25 N7 O5
CPUNUFGYWFHFOF-TVDBPQCTSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.203 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 75.060α = 90.00
b = 98.844β = 90.00
c = 206.628γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-02-13
    Type: Initial release
  • Version 1.1: 2013-05-15
    Type: Structure summary
  • Version 1.2: 2018-01-24
    Type: Database references, Source and taxonomy, Structure summary
  • Version 1.3: 2018-04-18
    Type: Data collection, Source and taxonomy