4IHA

Crystal structure of rice DWARF14 (D14) in complex with a GR24 hydrolysis intermediate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structures of two phytohormone signal-transducing alpha / beta hydrolases: karrikin-signaling KAI2 and strigolactone-signaling DWARF14.

Zhao, L.H.Zhou, X.E.Wu, Z.S.Yi, W.Xu, Y.Li, S.Xu, T.H.Liu, Y.Chen, R.Z.Kovach, A.Kang, Y.Hou, L.He, Y.Xie, C.Song, W.Zhong, D.Xu, Y.Wang, Y.Li, J.Zhang, C.Melcher, K.Xu, H.E.

(2013) Cell Res. 23: 436-439


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dwarf 88 esterase
A, B
268Oryza sativa subsp. japonicaGene Names: D14 (D88, HTD2)
EC: 3.1.-.-
Find proteins for Q10QA5 (Oryza sativa subsp. japonica)
Go to UniProtKB:  Q10QA5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OPL
Query on OPL

Download SDF File 
Download CCD File 
A, B
(2R,3R)-2,4,4-trihydroxy-3-methylbutanal
C5 H10 O4
NTSABUYTFOFFJR-DMTCNVIQSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.181 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 48.188α = 90.00
b = 88.729β = 90.00
c = 118.315γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
HKL-2000data reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-23
    Type: Initial release
  • Version 1.1: 2013-10-23
    Type: Database references