4IF6

Structure of NAD-dependent protein deacetylase sirtuin-1 (closed state, 2.25 A)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.156 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of a nucleoporin complex

Davenport, A.M.Huber, F.M.Hoelz, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NAD-dependent protein deacetylase sirtuin-1
A
281Homo sapiensMutation(s): 0 
Gene Names: SIRT1 (SIR2L1)
EC: 3.5.1.-
Find proteins for Q96EB6 (Homo sapiens)
Go to Gene View: SIRT1
Go to UniProtKB:  Q96EB6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
NAD-dependent protein deacetylase sirtuin-1
B
31Homo sapiensMutation(s): 0 
Gene Names: SIRT1 (SIR2L1)
EC: 3.5.1.-
Find proteins for Q96EB6 (Homo sapiens)
Go to Gene View: SIRT1
Go to UniProtKB:  Q96EB6
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
APR
Query on APR

Download SDF File 
Download CCD File 
A
ADENOSINE-5-DIPHOSPHORIBOSE
C15 H23 N5 O14 P2
SRNWOUGRCWSEMX-KEOHHSTQSA-N
 Ligand Interaction
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.156 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 92.662α = 90.00
b = 92.662β = 90.00
c = 97.700γ = 120.00
Software Package:
Software NamePurpose
SHARPphasing
HKL-2000data collection
PHENIXrefinement
SCALEPACKdata scaling
HKL-2000data reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-10-23
    Type: Initial release
  • Version 1.1: 2013-11-06
    Type: Database references, Structure summary