4ICX | pdb_00004icx

N-terminal C2 domain of human CEP120

PDB DOI: https://doi.org/10.2210/pdb4ICX/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-12-11 Released: 2014-06-18
Deposition Author(s): Janowski, R., Guarin, N., Coll, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.253 (Depositor), 0.253 (DCC)
R-Value Work:
0.196 (Depositor), 0.200 (DCC)
R-Value Observed:
0.199 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4ICX

This is version 1.1 of the entry. See complete history.

Literature

N-terminal C2 domain tandem of human CEP120 shows lipid binding properties

Janowski, R., Guarin, N., Speroni, S., Serrano, L., Coll, M.

To be published.

Macromolecule Content

Total Structure Weight: 58.64 kDa
Atom Count: 3,289
Modeled Residue Count: 394
Deposited Residue Count: 510
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Centrosomal protein of 120 kDa	A, B, C	170	Homo sapiens	Mutation(s): 0 Gene Names: CEP120, CCDC100
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N960 (Homo sapiens) Explore Q8N960 Go to UniProtKB: Q8N960
PHAROS: Q8N960 GTEx: ENSG00000168944
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8N960
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.253 (Depositor), 0.253 (DCC)
R-Value Work: 0.196 (Depositor), 0.200 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.28	α = 90
b = 117.39	β = 90
c = 134.84	γ = 90

Software Package:

Software Name	Purpose
DNA	data collection
Auto-Rickshaw	phasing
REFMAC	refinement
XDS	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-06-18

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-06-18
Type: Initial release
Version 1.1: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.