4ICM

Crystal structure of 5-carboxyvanillate decarboxylase LigW from Sphingomonas paucimobilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.825 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.163 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of 5-carboxyvanillate decarboxylase LigW from Sphingomonas paucimobilis

Fedorov, A.A.Fedorov, E.V.Vladimirova, A.Raushel, F.M.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
5-carboxyvanillate decarboxylase
A, B, C, D, E, F, G, H
335Sphingobium sp. (strain NBRC 103272 / SYK-6)Mutation(s): 0 
Gene Names: ligW
Find proteins for G2IN12 (Sphingobium sp. (strain NBRC 103272 / SYK-6))
Go to UniProtKB:  G2IN12
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
F, H
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
C
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.825 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.163 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 80.817α = 109.58
b = 96.897β = 90.48
c = 97.004γ = 111.66
Software Package:
Software NamePurpose
BALBESphasing
PHENIXrefinement
HKL-2000data scaling
CBASSdata collection
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-12-11
    Type: Initial release