4IBO

Crystal structure of a putative gluconate dehydrogenase from agrobacterium tumefaciens (target EFI-506446)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.152 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of a putative gluconate dehydrogenase from agrobacterium tumefaciens (target EFI-506446)

Vetting, M.W.Bouvier, J.T.Groninger-Poe, F.Morisco, L.L.Wasserman, S.R.Sojitra, S.Imker, H.J.Gerlt, J.A.Almo, S.C.Enzyme Function Initiative (EFI)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Gluconate dehydrogenase
A, B, C, D
271Agrobacterium fabrum (strain C58 / ATCC 33970)Mutation(s): 0 
Find proteins for A9CJ43 (Agrobacterium fabrum (strain C58 / ATCC 33970))
Go to UniProtKB:  A9CJ43
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, B, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, C, D
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.152 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 135.783α = 90.00
b = 135.783β = 90.00
c = 126.165γ = 120.00
Software Package:
Software NamePurpose
BALBESphasing
MOSFLMdata reduction
SCALAdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-12-26
    Type: Initial release