4I66 | pdb_00004i66

Crystal structure of Hoch_4089 protein from Haliangium ochraceum

• PDB DOI: https://doi.org/10.2210/pdb4I66/pdb

• Classification: Structural Genomics, Unknown Function
• Organism(s): Haliangium ochraceum DSM 14365
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2012-11-29 Released: 2013-02-13 
• Deposition Author(s): Michalska, K., Mack, J.C., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 
  0.198 (Depositor), 0.205 (DCC) 
• R-Value Work: 
  0.159 (Depositor), 0.167 (DCC) 
• R-Value Observed: 
  0.160 (Depositor) 

Literature

Crystal structure of Hoch_4089 protein from Haliangium ochraceum

Michalska, K., Mack, J.C., Endres, M., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 23.58 kDa 
• Atom Count: 1,773 
• Modeled Residue Count: 200 
• Deposited Residue Count: 209 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized protein Hoch_4089	A	209	Haliangium ochraceum DSM 14365	Mutation(s): 0  Gene Names: Hoch_4089
UniProt
Find proteins for D0LJL3 (Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)) Explore D0LJL3  Go to UniProtKB:  D0LJL3

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A], C [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free:  0.198 (Depositor), 0.205 (DCC) 
• R-Value Work:  0.159 (Depositor), 0.167 (DCC) 
• R-Value Observed: 0.160 (Depositor) 

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.185	α = 90
b = 58.185	β = 90
c = 94.779	γ = 120

Software Package:

Software Name	Purpose
SBC-Collect	data collection
SHELX	model building
MLPHARE	phasing
DM	model building
BUCCANEER	model building
ARP/wARP	model building
Coot	model building
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SHELX	phasing
DM	phasing
BUCCANEER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-02-13 
Deposition Author(s): Michalska, K., Mack, J.C., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2013-02-13
  Type: Initial release
  
• Version 1.1: 2024-11-27
  Changes: Data collection, Database references, Derived calculations, Structure summary