Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 34.25 kDa 
• Atom Count: 2309 
• Residue Count: 267 
• Unique protein chains: 1

4I0S

Crystal structure of spleen tyrosine kinase complexed with 2-(6-Chloro-1-methyl-1H-indazol-3-yl)-5H-pyrrolo[2,3-b]pyrazine-7-carboxylic acid isopropylamide

• DOI: 10.2210/pdb4I0S/pdb

• Classification: TRANSFERASE/TRANSFERASE INHIBITOR
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2012-11-19 Released: 2013-10-30 
• Deposition Author(s): Kuglstatter, A., Slade, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.98 Å
• R-Value Free: 0.236 
• R-Value Work: 0.217 
• R-Value Observed: 0.218 

Literature

Pyrrolopyrazines as selective spleen tyrosine kinase inhibitors.

Padilla, F., Bhagirath, N., Chen, S., Chiao, E., Goldstein, D.M., Hermann, J.C., Hsu, J., Kennedy-Smith, J.J., Kuglstatter, A., Liao, C., Liu, W., Lowrie, L.E., Luk, K.C., Lynch, S.M., Menke, J., Niu, L., Owens, T.D., O-Yang, C., Railkar, A., Schoenfeld, R.C., Slade, M., Steiner, S., Tan, Y.C., Villasenor, A.G., Wang, C., Wanner, J., Xie, W., Xu, D., Zhang, X., Zhou, M., Lucas, M.C.

(2013) J Med Chem 56: 1677-1692

• PubMed: 23350847 
• DOI: 10.1021/jm301720p
• Primary Citation of Related Structures:  
  4I0S, 4I0T, 4I0R


• PubMed Abstract: 
  

We describe the discovery of several pyrrolopyrazines as potent and selective Syk inhibitors and the efforts that eventually led to the desired improvements in physicochemical properties and human whole blood potencies. Ultimately, our mouse model revealed unexpected toxicity that precluded us from further advancing this series.

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Organizational Affiliation: 

Hoffmann-La Roche Inc., pRED, Pharma Research & Early Development, 340 Kingsland Street, Nutley, New Jersey 07110, United States.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tyrosine-protein kinase SYK	A	291	Homo sapiens	Mutation(s): 0  Gene Names: SYK EC: 2.7.10.2
Find proteins for P43405 (Homo sapiens) Explore P43405  Go to UniProtKB:  P43405
NIH Common Fund Data Resources
PHAROS:  P43405 GTEx:  ENSG00000165025

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
1B5	A	2-(6-chloro-1-methyl-1H-indazol-3-yl)-N-(propan-2-yl)-5H-pyrrolo[2,3-b]pyrazine-7-carboxamide C18 H17 Cl N6 O QROQIIGDSDRLDZ-UHFFFAOYSA-N

External Ligand Annotations
ID	Binding Affinity (Sequence Identity %)
1B5	IC50:  36   nM  Binding MOAD
1B5	IC50:  36   nM  BindingDB
1B5	IC50 :  36   nM  PDBBind
1B5	IC50:  512   nM  BindingDB
1B5	IC50:  16600   nM  BindingDB

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.98 Å
• R-Value Free: 0.236 
• R-Value Work: 0.217 
• R-Value Observed: 0.218 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.797	α = 90
b = 85.341	β = 90
c = 90.212	γ = 90

Software Package:

Software Name	Purpose
MAR345	data collection
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
REFMAC	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2012-11-19 
• Released Date: 2013-10-30 
Deposition Author(s): Kuglstatter, A., Slade, M.

Revision History 

• Version 1.0: 2013-10-30
  Type: Initial release
  
• Version 1.1: 2017-11-15
  Changes: Refinement description