4I0J

SPR and structural analysis yield insight towards mechanism of inhibition of BACE inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.295 
  • R-Value Work: 0.226 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

SPR and structural analysis yield insight towards mechanism of inhibition of BACE inhibitors

Mondal, K.Regnstrom, K.Morishige, W.Barbour, R.Beroza, P.Yao, N.Bova, M.P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-secretase 1
A
406Homo sapiensMutation(s): 0 
Gene Names: BACE1 (BACE, KIAA1149)
EC: 3.4.23.46
Find proteins for P56817 (Homo sapiens)
Go to Gene View: BACE1
Go to UniProtKB:  P56817
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
842
Query on 842

Download SDF File 
Download CCD File 
A
N-[(1S,2R)-1-(3,5-difluorobenzyl)-2-hydroxy-3-({1-[3-(1H-pyrazol-1-yl)phenyl]cyclohexyl}amino)propyl]acetamide
C27 H32 F2 N4 O2
QXNFPOMRKODYSK-IZZNHLLZSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
842IC50: 59 nM (100) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.295 
  • R-Value Work: 0.226 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 75.228α = 90.00
b = 104.039β = 90.00
c = 99.063γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
StructureStudiodata collection
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2012-11-16 
  • Released Date: 2013-03-06 
  • Deposition Author(s): Yao, N., Brecht, E.

Revision History 

  • Version 1.0: 2013-03-06
    Type: Initial release