4HTV | pdb_00004htv

Mouse importin alpha: BFDV Cap NLS peptide complex

PDB DOI: https://doi.org/10.2210/pdb4HTV/pdb

Classification: PROTEIN TRANSPORT/VIRAL PROTEIN
Organism(s): Mus musculus, Beak and feather disease virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-11-01 Released: 2012-11-28
Deposition Author(s): Patterson, E.I., Forwood, J.K., Raidal, S.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free:
0.228 (Depositor), 0.230 (DCC)
R-Value Work:
0.173 (Depositor), 0.170 (DCC)
R-Value Observed:
0.176 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Mouse importin alpha: BFDV Cap NLS peptide complex

Patterson, E.I., Forwood, J.K., Raidal, S.R.

To be published.

Macromolecule Content

Total Structure Weight: 59.51 kDa
Atom Count: 3,332
Modeled Residue Count: 434
Deposited Residue Count: 538
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Importin subunit alpha-2	A	509	Mus musculus	Mutation(s): 0 Gene Names: Kpna2, Rch1
UniProt & NIH Common Fund Data Resources
Find proteins for P52293 (Mus musculus) Explore P52293 Go to UniProtKB: P52293
IMPC: MGI:103561
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P52293
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
capsid protein	B	29	Beak and feather disease virus	Mutation(s): 0
UniProt
Find proteins for Q68SX0 (Beak and feather disease virus) Explore Q68SX0 Go to UniProtKB: Q68SX0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q68SX0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.228 (Depositor), 0.230 (DCC)
R-Value Work: 0.173 (Depositor), 0.170 (DCC)
R-Value Observed: 0.176 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.2	α = 90
b = 89.9	β = 90
c = 99.16	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
Coot	model building
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2012-11-28

Deposition Author(s):

Patterson, E.I.

Revision History (Full details and data files)

Version 1.0: 2012-11-28
Type: Initial release
Version 1.1: 2012-12-05
Changes: Database references, Structure summary
Version 1.2: 2024-02-28
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.