4HIU | pdb_00004hiu

Crystal structure of R34/53A mutant of borna disease virus matrix protein

• PDB DOI: https://doi.org/10.2210/pdb4HIU/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Borna disease virus
• Expression System: Escherichia coli BL21
• Mutation(s): Yes 


• Deposited: 2012-10-12 Released: 2013-10-30 
• Deposition Author(s): Dautel, P., Kolenko, P., Stubbs, M.T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Work: 
  0.185 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.187 (Depositor) 

Starting Model: experimental

Literature

Matrix protein variants provide support for alternative borna disease virus infection pathway

Dautel, P., Kolenko, P., Stubbs, M.T.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C4  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 16.79 kDa 
• Atom Count: 1,123 
• Modeled Residue Count: 132 
• Deposited Residue Count: 142 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Matrix protein	A	142	Borna disease virus	Mutation(s): 2  Gene Names: M
UniProt
Find proteins for P0C794 (Borna disease virus 1) Explore P0C794  Go to UniProtKB:  P0C794

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
5GP	C [auth A]	GUANOSINE-5'-MONOPHOSPHATE C10 H14 N5 O8 P RQFCJASXJCIDSX-UUOKFMHZSA-N
C5P	B [auth A]	CYTIDINE-5'-MONOPHOSPHATE C9 H14 N3 O8 P IERHLVCPSMICTF-XVFCMESISA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Work:  0.185 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.187 (Depositor) 

Space Group: I 4 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 139.732	α = 90
b = 139.732	β = 90
c = 139.732	γ = 90

Software Package:

Software Name	Purpose
MxCuBE	data collection
MOLREP	phasing
REFMAC	refinement
XDS	data reduction
SCALA	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-10-30 
Deposition Author(s): Dautel, P., Kolenko, P., Stubbs, M.T.

Revision History  

• Version 1.0: 2013-10-30
  Type: Initial release
  
• Version 1.1: 2023-09-20
  Changes: Data collection, Database references, Derived calculations, Refinement description