4HIT | pdb_00004hit

Crystal structure of H112W mutant of borna disease virus matrix protein

PDB DOI: https://doi.org/10.2210/pdb4HIT/pdb

Classification: VIRAL PROTEIN
Organism(s): Borna disease virus
Expression System: Escherichia coli BL21
Mutation(s): Yes

Deposited: 2012-10-12 Released: 2013-10-30
Deposition Author(s): Dautel, P., Kolenko, P., Stubbs, M.T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Work:
0.192 (Depositor), 0.200 (DCC)
R-Value Observed:
0.196 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Matrix protein variants provide support for alternative borna disease virus infection pathway

Dautel, P., Kolenko, P., Stubbs, M.T.

To be published.

Macromolecule Content

Total Structure Weight: 66.24 kDa
Atom Count: 4,481
Modeled Residue Count: 522
Deposited Residue Count: 568
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Matrix protein	A, B [auth D], C, D [auth B]	142	Borna disease virus	Mutation(s): 1 Gene Names: M
UniProt
Find proteins for P0C794 (Borna disease virus 1) Explore P0C794 Go to UniProtKB: P0C794
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0C794
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth D] SDF format, chain H [auth D] SDF format, chain J [auth C] SDF format, chain K [auth C] SDF format, chain L [auth C] SDF format, chain M [auth B] SDF format, chain N [auth B] SDF format, chain O [auth B] MOL2 format, chain F [auth A] MOL2 format, chain G [auth D] MOL2 format, chain H [auth D] MOL2 format, chain J [auth C] MOL2 format, chain K [auth C] MOL2 format, chain L [auth C] MOL2 format, chain M [auth B] MOL2 format, chain N [auth B] MOL2 format, chain O [auth B] mmCIF format, chain F [auth A] mmCIF format, chain G [auth D] mmCIF format, chain H [auth D] mmCIF format, chain J [auth C] mmCIF format, chain K [auth C] mmCIF format, chain L [auth C] mmCIF format, chain M [auth B] mmCIF format, chain N [auth B] mmCIF format, chain O [auth B]	F [auth A] G [auth D] H [auth D] J [auth C] K [auth C] F [auth A], G [auth D], H [auth D], J [auth C], K [auth C], L [auth C], M [auth B], N [auth B], O [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain F [auth A] Focus chain G [auth D] Focus chain H [auth D] Focus chain J [auth C] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth B] Focus chain N [auth B] Focus chain O [auth B] Interactions & Density Focus chain F [auth A] Focus chain G [auth D] Focus chain H [auth D] Focus chain J [auth C] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth B] Focus chain N [auth B] Focus chain O [auth B]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain I [auth D] MOL2 format, chain E [auth A] MOL2 format, chain I [auth D] mmCIF format, chain E [auth A] mmCIF format, chain I [auth D]	E [auth A], I [auth D]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain E [auth A] Focus chain I [auth D] Interactions & Density Focus chain E [auth A] Focus chain I [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Work: 0.192 (Depositor), 0.200 (DCC)
R-Value Observed: 0.196 (Depositor)

Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 123.322	α = 90
b = 123.322	β = 90
c = 113.501	γ = 120

Software Package:

Software Name	Purpose
MxCuBE	data collection
MOLREP	phasing
REFMAC	refinement
XDS	data reduction
SCALA	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-10-30

Deposition Author(s):

Dautel, P.

Kolenko, P.

Stubbs, M.T.

Revision History (Full details and data files)

Version 1.0: 2013-10-30
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.2: 2023-11-29
Changes: Database references