4HE6

Crystal structure of the C-terminal domain of Geobacillus thermoleovorans putative U32 peptidase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.10 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.123 
  • R-Value Observed: 0.123 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Ultratight crystal packing of a 10 kDa protein.

Trillo-Muyo, S.Jasilionis, A.Domagalski, M.J.Chruszcz, M.Minor, W.Kuisiene, N.Arolas, J.L.Sola, M.Gomis-Ruth, F.X.

(2013) Acta Crystallogr D Biol Crystallogr 69: 464-470

  • DOI: 10.1107/S0907444912050135
  • Primary Citation of Related Structures:  
    4HE5, 4HE6

  • PubMed Abstract: 
  • While small organic molecules generally crystallize forming tightly packed lattices with little solvent content, proteins form air-sensitive high-solvent-content crystals. Here, the crystallization and full structure analysis of a novel recombinant 10 kDa protein corresponding to the C-terminal domain of a putative U32 peptidase are reported ...

    While small organic molecules generally crystallize forming tightly packed lattices with little solvent content, proteins form air-sensitive high-solvent-content crystals. Here, the crystallization and full structure analysis of a novel recombinant 10 kDa protein corresponding to the C-terminal domain of a putative U32 peptidase are reported. The orthorhombic crystal contained only 24.5% solvent and is therefore among the most tightly packed protein lattices ever reported.


    Organizational Affiliation

    Proteolysis Laboratory, Department of Structural Biology, Molecular Biology Institute of Barcelona, Spanish Research Council CSIC, Barcelona Science Park, c/Baldiri Reixac 15-21, 08028 Barcelona, Spain.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Peptidase family U32A89Geobacillus thermoleovorans CCB_US3_UF5Mutation(s): 0 
Gene Names: GTCCBUS3UF5_28720
Find proteins for G8N3E1 (Geobacillus thermoleovorans CCB_US3_UF5)
Explore G8N3E1 
Go to UniProtKB:  G8N3E1
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download Ideal Coordinates CCD File 
C [auth A]ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
UNX
Query on UNX

Download Ideal Coordinates CCD File 
B [auth A]UNKNOWN ATOM OR ION
X
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.10 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.123 
  • R-Value Observed: 0.123 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 28.4α = 90
b = 36.3β = 90
c = 65.67γ = 90
Software Package:
Software NamePurpose
ProDCdata collection
PHASERphasing
BUSTERrefinement
XDSdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-11-14
    Type: Initial release
  • Version 1.1: 2013-02-27
    Changes: Database references
  • Version 1.2: 2013-06-19
    Changes: Database references
  • Version 1.3: 2017-11-15
    Changes: Refinement description