4HCJ

Crystal Structure of ThiJ/PfpI Domain Protein from Brachyspira murdochii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.12 Å
  • R-Value Free: 0.127 
  • R-Value Work: 0.116 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of ThiJ/PfpI Domain Protein from Brachyspira murdochii

Kim, Y.Bigelow, L.Jedrzejczak, R.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ThiJ/PfpI domain protein
A
177Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150)Mutation(s): 0 
Find proteins for D5U596 (Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150))
Go to UniProtKB:  D5U596
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMT
Query on FMT

Download SDF File 
Download CCD File 
A
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 64.799α = 90.00
b = 42.197β = 116.95
c = 66.366γ = 90.00
Software Package:
Software NamePurpose
SHELXSphasing
HKL-3000phasing
MLPHAREphasing
HKL-3000data collection
RESOLVEphasing
HKL-3000data reduction
PHENIXrefinement
SBC-Collectdata collection
ARP/wARPmodel building
HKL-3000data scaling
ahelx-97refinement
RESOLVEmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-10-24
    Type: Initial release
  • Version 1.1: 2017-11-15
    Type: Refinement description