4HC1

Crystal structure of a loop deleted mutant of human MAdCAM-1 D1D2 complexed with Fab 10G3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.871 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A Different Fold with an Integrin-Binding Loop Specialized for Flexibility in Mucosal Addressin Cell Adhesion Molecule-1

Springer, T.Yu, Y.Zhu, J.Wang, J.-H.Huang, P.-S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mucosal addressin cell adhesion molecule 1
A, B
206Homo sapiensMutation(s): 2 
Gene Names: MADCAM1
Find proteins for Q13477 (Homo sapiens)
Go to Gene View: MADCAM1
Go to UniProtKB:  Q13477
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
10G3 heavy chain
H, M
220N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
10G3 light chain
L, N
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.871 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.200 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 317.854α = 90.00
b = 71.727β = 93.29
c = 70.557γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHASERphasing
SCALAdata scaling
PHENIXrefinement
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-23
    Type: Initial release