4H7L

Crystal structure of Plim_4148 protein from Planctomyces limnophilus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.452 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.177 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
uncharacterized protein
A, B
157Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)Mutation(s): 0 
Find proteins for D5SZ58 (Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290))
Go to UniProtKB:  D5SZ58
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CU
Query on CU

Download SDF File 
Download CCD File 
A, B
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 67.091α = 90.00
b = 67.091β = 90.00
c = 109.874γ = 120.00
Software Package:
Software NamePurpose
Cootmodel building
HKL-3000data scaling
BUCCANEERphasing
HKL-3000data reduction
DMphasing
DMmodel building
SHELXmodel building
BUCCANEERmodel building
SHELXphasing
MLPHAREphasing
PHENIXrefinement
ARP/wARPmodel building
SBC-Collectdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-02
    Type: Initial release