4H42

Synthesis of a Weak Basic uPA Inhibitor and Crystal Structure of Complex with uPA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.207 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Synthesis of a Weak Basic uPA Inhibitor and Crystal Structure of Complex with uPA

Yu, H.-Y.Gao, D.Xu, Z.Jiang, L.-G.Hong, Z.-B.Fan, X.Yuan, C.Wang, J.-D.Huang, M.

(2013) CHIN.J.STRUCT.CHEM. 32: 961-968


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Urokinase-type plasminogen activator
U
248Homo sapiensMutation(s): 2 
Gene Names: PLAU
EC: 3.4.21.73
Find proteins for P00749 (Homo sapiens)
Go to Gene View: PLAU
Go to UniProtKB:  P00749
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PG6
Query on PG6

Download SDF File 
Download CCD File 
U
1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE
C12 H26 O6
DMDPGPKXQDIQQG-UHFFFAOYSA-N
 Ligand Interaction
11E
Query on 11E

Download SDF File 
Download CCD File 
U
N-[(2-amino-1,3-benzothiazol-6-yl)carbonyl]glycine
C10 H9 N3 O3 S
JTXHRLUPQXMVPR-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
11EKi: 341000 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.207 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 120.916α = 90.00
b = 120.916β = 90.00
c = 42.875γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
PROTEUM PLUSdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-10-30
    Type: Initial release