4H3W

Crystal structure of a putative secreted protein (BDI_1231) from Parabacteroides distasonis ATCC 8503 at 2.00 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of a hypothetical protein (BDI_1231) from Parabacteroides distasonis ATCC 8503 at 2.00 A resolution

JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
hypothetical protein
A, B
330Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)N/A
Find proteins for A6LBC8 (Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152))
Go to UniProtKB:  A6LBC8
Small Molecules
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
MLY
Query on MLY
A, B
L-PEPTIDE LINKINGC8 H18 N2 O2LYS
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 38.746α = 91.64
b = 65.323β = 92.35
c = 78.756γ = 104.50
Software Package:
Software NamePurpose
XSCALEdata scaling
SHELXphasing
PDB_EXTRACTdata extraction
REFMACrefinement
SHARPphasing
SHELXDphasing
MolProbitymodel building
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-11-14
    Type: Initial release
  • Version 1.1: 2014-12-24
    Type: Structure summary
  • Version 1.2: 2017-11-15
    Type: Refinement description