4H2Q

structure of MHPCO-5HN complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.502 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of 2-Methyl-3-hydroxypyridiine-5-carboxylic acid oxygenase

Kobayashi, J.Yoshida, H.Mikami, B.Hayashi, H.Kamitori, S.Yagi, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase
A
379Rhizobium loti (strain MAFF303099)N/A
Find proteins for Q988D3 (Rhizobium loti (strain MAFF303099))
Go to UniProtKB:  Q988D3
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

Download SDF File 
Download CCD File 
A
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
BME
Query on BME

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Download CCD File 
A
BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

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Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
5HN
Query on 5HN

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Download CCD File 
A
5-hydroxypyridine-3-carboxylic acid
5-Hydroxynicotinic Acid
C6 H5 N O3
ATTDCVLRGFEHEO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.502 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.166 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 49.338α = 90.00
b = 131.140β = 90.00
c = 132.282γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
PHENIXrefinement
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-09-18
    Type: Initial release
  • Version 1.1: 2014-04-02
    Type: Structure summary