Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Protein Workshop | Ligand Explorer

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 146198.91 
• Atom Count: 9100 
• Residue Count: 1272 
• Unique protein chains: 1

4H1I

Structure of human thymidylate synthase at low salt conditions

• DOI: 10.2210/pdb4H1I/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli


• Deposited: 2012-09-10 Released: 2012-10-03 
• Deposition Author(s): Brunn, N., Dibrov, S., Hermann, T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.095 Å
• R-Value Free: 0.285 
• R-Value Work: 0.232 

Literature

Analysis of mRNA recognition by human thymidylate synthase.

Brunn, N.D., Dibrov, S.M., Kao, M.B., Ghassemian, M., Hermann, T.

(2014) Biosci.Rep. 34: e00168-e00168

• PubMed: 25423174 
• DOI: 10.1042/BSR20140137
• Primary Citation of Related Structures:  
  4GYH


• PubMed Abstract: 
  

Expression of hTS (human thymidylate synthase), a key enzyme in thymidine biosynthesis, is regulated on the translational level through a feedback mechanism that is rarely found in eukaryotes. At low substrate concentrations, the ligand-free enzyme binds to its own mRNA and stabilizes a hairpin structure that sequesters the start codon. When in complex with dUMP (2'-deoxyuridine-5'-monophosphate) and a THF (tetrahydrofolate) cofactor, the enzyme adopts a conformation that is unable to bind and repress expression of mRNA. Here, we have used a combination of X-ray crystallography, RNA mutagenesis and site-specific cross-linking studies to investigate the molecular recognition of TS mRNA by the hTS enzyme. The interacting mRNA region was narrowed to the start codon and immediately flanking sequences. In the hTS enzyme, a helix-loop-helix domain on the protein surface was identified as the putative RNA-binding site.

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Organizational Affiliation: 

*Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, U.S.A.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Thymidylate synthase	A, B, C, D	318	Homo sapiens	Mutation(s): 0  Gene Names: TYMS (TS) EC: 2.1.1.45
Find proteins for P04818 (Homo sapiens) Go to Gene View: TYMS Go to UniProtKB:  P04818

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
SO4	A, C, D	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.095 Å
• R-Value Free: 0.285 
• R-Value Work: 0.232 
• Space Group: C 1 2 1

Unit Cell:

Length (Å)	Angle (°)
a = 157.855	α = 90.00
b = 94.927	β = 122.75
c = 131.439	γ = 90.00

Software Package:

Software Name	Purpose
PHENIX	refinement
MAR345dtb	data collection
HKL-2000	data reduction
PHASER	phasing
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2012-09-10 
• Released Date: 2012-10-03 
• Deposition Author(s): Brunn, N., Dibrov, S., Hermann, T.

Revision History 

• Version 1.0: 2012-10-03
  Type: Initial release
• Version 1.1: 2014-12-24
  Type: Database references
• Version 1.2: 2015-01-28
  Type: Database references