4H15

Crystal Structure of a short chain alcohol dehydrogenase-related dehydrogenase (target ID NYSGRC-011812) from Sinorhizobium meliloti 1021 in space group P21


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.150 
  • R-Value Observed: 0.150 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal Structure of a short chain alcohol dehydrogenase-related dehydrogenase (target ID NYSGRC-011812) from Sinorhizobium meliloti 1021 in space group P21

Ghosh, A.Bhoshle, R.Toro, R.Gizzi, A.Hillerich, B.Seidel, R.Almo, S.C.New York Structural Genomics Research Consortium

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Short chain alcohol dehydrogenase-related dehydrogenaseA, B, C, D261Sinorhizobium meliloti 1021Mutation(s): 0 
Gene Names: RA0888SMa1629
EC: 1.1.1
UniProt
Find proteins for Q92YJ2 (Rhizobium meliloti (strain 1021))
Explore Q92YJ2 
Go to UniProtKB:  Q92YJ2
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MPD
Query on MPD

Download Ideal Coordinates CCD File 
AB [auth C] , IA [auth B] , JA [auth B] , KA [auth B] , NB [auth D] , OB [auth D] , T [auth A] , U [auth A] , 
AB [auth C],  IA [auth B],  JA [auth B],  KA [auth B],  NB [auth D],  OB [auth D],  T [auth A],  U [auth A],  V [auth A],  XA [auth C],  YA [auth C],  ZA [auth C]
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
CA
Query on CA

Download Ideal Coordinates CCD File 
BB [auth D] , CB [auth D] , DB [auth D] , E [auth A] , EB [auth D] , LA [auth C] , MA [auth C] , NA [auth C] , 
BB [auth D],  CB [auth D],  DB [auth D],  E [auth A],  EB [auth D],  LA [auth C],  MA [auth C],  NA [auth C],  W [auth B],  X [auth B],  Y [auth B]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
AA [auth B] , BA [auth B] , CA [auth B] , DA [auth B] , EA [auth B] , F [auth A] , FA [auth B] , FB [auth D] , 
AA [auth B],  BA [auth B],  CA [auth B],  DA [auth B],  EA [auth B],  F [auth A],  FA [auth B],  FB [auth D],  G [auth A],  GA [auth B],  GB [auth D],  H [auth A],  HA [auth B],  HB [auth D],  I [auth A],  IB [auth D],  J [auth A],  JB [auth D],  K [auth A],  KB [auth D],  L [auth A],  LB [auth D],  M [auth A],  MB [auth D],  N [auth A],  O [auth A],  OA [auth C],  P [auth A],  PA [auth C],  Q [auth A],  QA [auth C],  R [auth A],  RA [auth C],  S [auth A],  SA [auth C],  TA [auth C],  UA [auth C],  VA [auth C],  WA [auth C],  Z [auth B]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, DL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.150 
  • R-Value Observed: 0.150 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.304α = 90
b = 119.143β = 105.83
c = 67.156γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
CBASSdata collection
HKL-3000data reduction
SOLVEphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-09-19
    Type: Initial release