4GVO | pdb_00004gvo

Putative L-Cystine ABC transporter from Listeria monocytogenes

• PDB DOI: https://doi.org/10.2210/pdb4GVO/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Listeria monocytogenes EGD-e
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2012-08-30 Released: 2012-09-12 
• Deposition Author(s): Osipiuk, J., Makowska-Grzyska, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 
  0.154 (Depositor), 0.147 (DCC) 
• R-Value Work: 
  0.106 (Depositor), 0.101 (DCC) 
• R-Value Observed: 
  0.108 (Depositor) 

Starting Model: experimental

Literature

Putative L-Cystine ABC transporter from Listeria monocytogenes

Osipiuk, J., Makowska-Grzyska, M., Kwon, K., Anderson, W.F., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 54.46 kDa 
• Atom Count: 4,804 
• Modeled Residue Count: 472 
• Deposited Residue Count: 486 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lmo2349 protein	A, B	243	Listeria monocytogenes EGD-e	Mutation(s): 0  Gene Names: lmo2349
UniProt
Find proteins for Q8Y4T3 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)) Explore Q8Y4T3  Go to UniProtKB:  Q8Y4T3

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HIS	E [auth A], G [auth B]	HISTIDINE C6 H10 N3 O2 HNDVDQJCIGZPNO-YFKPBYRVSA-O
CSX	F [auth A], H [auth B]	S-OXY CYSTEINE C3 H7 N O3 S BHLMCOCHAVMHLD-REOHCLBHSA-N
CL	C [auth A], I [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA	D [auth A], J [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free:  0.154 (Depositor), 0.147 (DCC) 
• R-Value Work:  0.106 (Depositor), 0.101 (DCC) 
• R-Value Observed: 0.108 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m34gvo

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 31.99	α = 90
b = 170.628	β = 96.37
c = 45.049	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
MOLREP	phasing
HKL-3000	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-09-12 
Deposition Author(s): Osipiuk, J., Makowska-Grzyska, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2012-09-12
  Type: Initial release
  
• Version 1.1: 2023-09-13
  Changes: Data collection, Database references, Derived calculations, Refinement description