Download MendeleyCrystal Structure of Amidotransferase HisH from Vibrio cholerae.
Maltseva, N., Kim, Y., Shatsman, S., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
4GUD
Crystal Structure of Amidotransferase HisH from Vibrio cholerae
- PDB DOI: https://doi.org/10.2210/pdb4GUD/pdb
- Classification: TRANSFERASE
- Organism(s): Vibrio cholerae O1 biovar El Tor str. N16961
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2012-08-29 Released: 2012-09-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.208
- R-Value Work: 0.174
- R-Value Observed: 0.176
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Imidazole glycerol phosphate synthase subunit HisH | A, B | 211 | Vibrio cholerae O1 biovar El Tor str. N16961 | Mutation(s): 0 Gene Names: hisH, VC_1136 EC: 2.4.2 (PDB Primary Data), 4.3.2.10 (UniProt), 3.5.1.2 (UniProt) |  |
UniProt | |||||
Find proteins for Q9KSX0 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KSX0 Go to UniProtKB: Q9KSX0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KSX0 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 1PE Query on 1PE | E [auth B] | PENTAETHYLENE GLYCOL C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N |  | Ligand Interaction | |
| PEG Query on PEG | D [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | Ligand Interaction | |
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | F [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.208
- R-Value Work: 0.174
- R-Value Observed: 0.176
- Space Group: P 21 21 2
- Diffraction Data: https://doi.org/10.18430/M34GUD
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.422 | α = 90 |
| b = 118.234 | β = 90 |
| c = 42.975 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| SHELX | model building |
| ARP/wARP | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2012-09-12 Deposition Author(s): Maltseva, N., Kim, Y., Shatsman, S., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2012-09-12
Type: Initial release - Version 1.1: 2017-11-15
Changes: Database references, Refinement description
