4GT8

Crystal Structure of the Catalytic and ATP-binding Domain from VraS in Complex with ADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.51 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of the Staphylococcus aureus VraS Catalytic and ATP-binding Domain

Leonard, P.G.Valverde, J.Stock, A.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Sensor protein vraS
A
139Staphylococcus aureus (strain Mu50 / ATCC 700699)Mutation(s): 0 
Gene Names: vraS
EC: 2.7.13.3
Find proteins for Q7A2Q0 (Staphylococcus aureus (strain Mu50 / ATCC 700699))
Go to UniProtKB:  Q7A2Q0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download SDF File 
Download CCD File 
A
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.51 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.183 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 31.192α = 90.00
b = 47.233β = 90.00
c = 89.398γ = 90.00
Software Package:
Software NamePurpose
ADSCdata collection
PHENIXrefinement
SCALEPACKdata scaling
PHASERphasing
DENZOdata reduction
RESOLVEphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-08-28
    Type: Initial release