4GS5

The crystal structure of acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein from Dyadobacter fermentans DSM 18053


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.018 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The crystal structure of acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein from Dyadobacter fermentans DSM 18053

Tan, K.Holowicki, J.Clancy, S.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein
A
358Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)Mutation(s): 0 
Find proteins for C6W5A4 (Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114))
Go to UniProtKB:  C6W5A4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IOD
Query on IOD

Download SDF File 
Download CCD File 
A
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.018 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.196 
  • Space Group: P 43 2 2
Unit Cell:
Length (Å)Angle (°)
a = 67.148α = 90.00
b = 67.148β = 90.00
c = 176.257γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data reduction
HKL-3000phasing
RESOLVEphasing
MLPHAREphasing
DMphasing
HKL-3000data scaling
SHELXDphasing
RESOLVEmodel building
PHENIXrefinement
DMmodel building
SBC-Collectdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-09-12
    Type: Initial release