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Download EndnoteCrystal structure of a hypothetical protein (BACUNI_01323) from Bacteroides uniformis ATCC 8492 at 2.32 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
4GHB
Crystal structure of a porin-like protein (BACUNI_01323) from Bacteroides uniformis ATCC 8492 at 2.32 A resolution
- DOI: 10.2210/pdb4GHB/pdb
- Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION
- Organism(s): Bacteroides uniformis (strain ATCC 8492 / DSM 6597 / CIP 103695 / JCM 5828 / NCTC 13054 / VPI 0061)
- Expression System: Escherichia coli
- Deposited: 2012-08-07 Released: 2012-08-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.32 Å
- R-Value Free: 0.195
- R-Value Work: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| hypothetical protein | A, B | 272 | Bacteroides uniformis (strain ATCC 8492 / DSM 6597 / CIP 103695 / JCM 5828 / NCTC 13054 / VPI 0061) | Mutation(s): 0 |
Find proteins for A7V185 (Bacteroides uniformis (strain ATCC 8492 / DSM 6597 / CIP 103695 / JCM 5828 / NCTC 13054 / VPI 0061)) Go to UniProtKB: A7V185 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A, B | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| CL Query on CL | A, B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| GOL Query on GOL | A, B | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.32 Å
- R-Value Free: 0.195
- R-Value Work: 0.174
- Space Group: P 63 2 2
- Diffraction Data DOI:
10.18430/M34GHB Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 168.615 | α = 90.00 |
| b = 168.615 | β = 90.00 |
| c = 147.749 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| BUSTER-TNT | refinement |
| MolProbity | model building |
| BUSTER | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| SHARP | phasing |
| SHELX | phasing |
| SHELXD | phasing |
Entry History
Deposition Data
- Deposited Date: 2012-08-07
- Released Date: 2012-08-29
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2012-08-29
Type: Initial release - Version 1.1: 2014-12-24
Type: Structure summary - Version 1.2: 2017-11-15
Type: Refinement description - Version 1.3: 2018-01-24
Type: Database references
