4GDY

Kynurenine Aminotransferase II inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.174 

wwPDB Validation 3D Report Full Report



Literature

Discovery of Hydroxamate Bioisosteres as KATII Inhibitors with Improved Oral Bioavailability and Pharmacokinetics

Verhoest, P.R.Henderson, J.L.Sawant-Basak, A.Tuttle, J.B.Dounay, A.B.McAllister, L.A.Pandit, J.Rong, S.Hou, X.Bechle, B.Parikh, V.Evrard, E.Ghosh, S.Salafia, M.A.Rago, B.Obach, R.Fonseca, K.R.Chang, C.

(2012) Medchemcomm 


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Kynurenine/alpha-aminoadipate aminotransferase, mitochondrialA, B439Homo sapiensMutation(s): 2 
Gene Names: AADATKAT2
EC: 2.6.1.39 (PDB Primary Data), 2.6.1.7 (PDB Primary Data)
Find proteins for Q8N5Z0 (Homo sapiens)
Explore Q8N5Z0 
Go to UniProtKB:  Q8N5Z0
NIH Common Fund Data Resources
PHAROS  Q8N5Z0
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
0X1
Query on 0X1

Download CCD File 
A, B
(5-hydroxy-6-methyl-4-{[(1-oxo-7-phenoxy-1,2-dihydro[1,2,4]triazolo[4,3-a]quinolin-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate
C24 H22 N5 O7 P
AMDYNPYMOMDDSQ-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
0X1IC50 :  84   nM  PDBBind
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.89 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.174 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 116.457α = 90
b = 116.457β = 90
c = 115.211γ = 120
Software Package:
Software NamePurpose
SCALAdata scaling
BUSTER-TNTrefinement
PDB_EXTRACTdata extraction
JDirectordata collection
XDSdata reduction
PHASERphasing
BUSTERrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2012-08-01 
  • Released Date: 2012-08-29 
  • Deposition Author(s): Pandit, J.

Revision History 

  • Version 1.0: 2012-08-29
    Type: Initial release