Structure of a fragment of the rod domain of plectin

Experimental Data Snapshot

  • Resolution: 1.70 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.215 

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This is version 1.3 of the entry. See complete history


Exploiting tertiary structure through local folds for crystallographic phasing.

Sammito, M.Millan, C.Rodriguez, D.D.de Ilarduya, I.M.Meindl, K.De Marino, I.Petrillo, G.Buey, R.M.de Pereda, J.M.Zeth, K.Sheldrick, G.M.Uson, I.

(2013) Nat Methods 10: 1099-1101

  • DOI: https://doi.org/10.1038/nmeth.2644
  • Primary Citation of Related Structures:  
    4GDO, 4GN0

  • PubMed Abstract: 

    We describe an algorithm for phasing protein crystal X-ray diffraction data that identifies, retrieves, refines and exploits general tertiary structural information from small fragments available in the Protein Data Bank. The algorithm successfully phased, through unspecific molecular replacement combined with density modification, all-helical, mixed alpha-beta, and all-beta protein structures. The method is available as a software implementation: Borges.

  • Organizational Affiliation

    Instituto de Biología Molecular de Barcelona, Consejo Superior de Investigaciones Científicas, Barcelona, Spain.

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
A, B, C, D, E
A, B, C, D, E, F
43Homo sapiensMutation(s): 0 
Gene Names: PLECPLEC1
UniProt & NIH Common Fund Data Resources
Find proteins for Q15149 (Homo sapiens)
Explore Q15149 
Go to UniProtKB:  Q15149
PHAROS:  Q15149
GTEx:  ENSG00000178209 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15149
Sequence Annotations
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Resolution: 1.70 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.213 
  • R-Value Observed: 0.215 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 90.62α = 90
b = 35.87β = 94.11
c = 75.69γ = 90
Software Package:
Software NamePurpose
MAR345dtbdata collection
XDSdata reduction
XSCALEdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-09-11
    Type: Initial release
  • Version 1.1: 2013-09-25
    Changes: Database references
  • Version 1.2: 2013-11-20
    Changes: Database references
  • Version 1.3: 2024-02-28
    Changes: Data collection, Database references