4GCA | pdb_00004gca

Complex of Aldose Reductase with inhibitor IDD 1219

PDB DOI: https://doi.org/10.2210/pdb4GCA/pdb

Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-07-30 Released: 2013-07-31
Deposition Author(s): Podjarny, A.D., Van Zandt, M., Geraci, L.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 0.90 Å
R-Value Free:
0.145 (Depositor), 0.151 (DCC)
R-Value Work:
0.134 (Depositor)
R-Value Observed:
0.134 (Depositor)

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Literature

Complex of Aldose Reductase with inhibitor IDD 1219

Podjarny, A.D., Van Zandt, M., Geraci, L.S.

To be published.

Macromolecule Content

Total Structure Weight: 36.88 kDa
Atom Count: 3,507
Modeled Residue Count: 315
Deposited Residue Count: 315
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aldose reductase	A	315	Homo sapiens	Mutation(s): 0 Gene Names: AKR1B1, ALDR1 EC: 1.1.1.21 (PDB Primary Data), 1.1.1.372 (UniProt), 1.1.1.300 (UniProt), 1.1.1.54 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P15121 (Homo sapiens) Explore P15121 Go to UniProtKB: P15121
PHAROS: P15121 GTEx: ENSG00000085662
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P15121
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAP Query on NAP Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₂₈ N₇ O₁₇ P₃ XJLXINKUBYWONI-NNYOXOHSSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]
2X9 Query on 2X9 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	{2,6-dimethyl-5-[(4,5,7-trifluoro-1,3-benzothiazol-2-yl)methyl]pyridin-3-yl}acetic acid C₁₇ H₁₃ F₃ N₂ O₂ S SGWFOCMKXJYHKO-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 0.90 Å
R-Value Free: 0.145 (Depositor), 0.151 (DCC)
R-Value Work: 0.134 (Depositor)
R-Value Observed: 0.134 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.102	α = 67.83
b = 47.218	β = 76.96
c = 39.953	γ = 76.15

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
AMoRE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-07-31

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-07-31
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references, Derived calculations

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