Macromolecule Content

Total Structure Weight: 36.27 kDa
Atom Count: 2222
Residue Count: 270
Unique protein chains: 1

4G6W

Human Thymidylate Synthase M190K with bound 4-Bromobenzene-1,2,3-triol

DOI: 10.2210/pdb4G6W/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2012-07-19 Released: 2013-07-24
Deposition Author(s): Celeste, L.R., Lebioda, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.264
R-Value Work: 0.222
R-Value Observed: 0.224

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Oxidation of Cysteine 195 of Huyman Thymidylate Synthase by Purpurogallin

Celeste, L.R., Lovelace, L.L., Lebioda, L.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thymidylate synthase	X	313	Homo sapiens	Mutation(s): 1 Gene Names: TYMS, TS, OK/SW-cl.29 EC: 2.1.1.45
Find proteins for P04818 (Homo sapiens) Explore P04818 Go to UniProtKB: P04818
NIH Common Fund Data Resources
PHAROS: P04818 GTEx: ENSG00000176890
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PBX Query on PBX Download Ideal Coordinates CCD File SDF format, chain B [X] MOL2 format, chain B [X]	X	4-bromobenzene-1,2,3-triol C₆ H₅ Br O₃ TYRFQQZIVRBJAK-UHFFFAOYSA-N		Ligand Interaction
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain C [X] SDF format, chain D [X] MOL2 format, chain C [X] MOL2 format, chain D [X]	X	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CME Query on CME	X	L-PEPTIDE LINKING	C₅ H₁₁ N O₃ S₂		CYS
CSD Query on CSD	X	L-PEPTIDE LINKING	C₃ H₇ N O₄ S		CYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.264
R-Value Work: 0.222
R-Value Observed: 0.224
Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 95.846	α = 90
b = 95.846	β = 90
c = 80.525	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHASES	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2012-07-19
Released Date: 2013-07-24

Deposition Author(s):

Revision History

Version 1.0: 2013-07-24
Type: Initial release
Version 1.1: 2014-11-19
Changes: Structure summary

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.