Biological Assembly 1  

 3D View: Structure | Electron Density

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - AB 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

 3D View: Structure | Electron Density

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - AB 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 98739.66 
• Atom Count: 6883 
• Residue Count: 910 
• Unique protein chains: 3

4G6A

Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the broadly neutralizing antibody AP33

• DOI: 10.2210/pdb4G6A/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Hepacivirus C
• Expression System: Homo sapiens


• Deposited: 2012-07-18 Released: 2012-09-26 
• Deposition Author(s): Kong, L., Wilson, I.A., Law, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.501 Å
• R-Value Free: 0.220 
• R-Value Work: 0.178 

Literature

Structure of Hepatitis C Virus Envelope Glycoprotein E2 Antigenic Site 412 to 423 in Complex with Antibody AP33.

Kong, L., Giang, E., Nieusma, T., Robbins, J.B., Deller, M.C., Stanfield, R.L., Wilson, I.A., Law, M.

(2012) J.Virol. 86: 13085-13088

• PubMed: 22973046 
• DOI: 10.1128/JVI.01939-12


• PubMed Abstract: 
  

We have determined the crystal structure of the broadly neutralizing antibody (bnAb) AP33, bound to a peptide corresponding to hepatitis C virus (HCV) E2 envelope glycoprotein antigenic site 412 to 423. Comparison with bnAb HCV1 bound to the same epitope reveals a different angle of approach to the antigen by bnAb AP33 and slight variation in its β-hairpin conformation of the epitope. These structures establish two different modes of binding to E2 that antibodies adopt to neutralize diverse HCV.

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Organizational Affiliation: 

Department of Molecular Biology, The Scripps Research Institute, La Jolla, California, USA.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
E2 peptide	B, A	13	Hepacivirus C	Mutation(s): 0
Find proteins for Q9YK84 (Hepacivirus C) Go to UniProtKB:  Q9YK84

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
AP33 Heavy Chain	C, H	224	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
AP33 Light chain	D, L	218	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.501 Å
• R-Value Free: 0.220 
• R-Value Work: 0.178 
• Space Group: P 1 2₁ 1

Unit Cell:

Length (Å)	Angle (°)
a = 44.875	α = 90.00
b = 191.804	β = 111.08
c = 59.374	γ = 90.00

Software Package:

Software Name	Purpose
Blu-Ice	data collection
PHASER	phasing
PHENIX	refinement
SCALEPACK	data scaling
HKL-2000	data reduction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2012-07-18 
• Released Date: 2012-09-26 
• Deposition Author(s): Kong, L., Wilson, I.A., Law, M.

Revision History 

• Version 1.0: 2012-09-26
  Type: Initial release
• Version 1.1: 2012-11-14
  Type: Database references