4G63

Crystal structure of cytosolic IMP-GMP specific 5'-nucleotidase (lpg0095) in complex with phosphate ions from Legionella pneumophila, Northeast Structural Genomics Consortium Target LgR1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.222 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Allosteric regulation and substrate activation in cytosolic nucleotidase II from Legionella pneumophila.

Srinivasan, B.Forouhar, F.Shukla, A.Sampangi, C.Kulkarni, S.Abashidze, M.Seetharaman, J.Lew, S.Mao, L.Acton, T.B.Xiao, R.Everett, J.K.Montelione, G.T.Tong, L.Balaram, H.

(2014) Febs J. 281: 1613-1628


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cytosolic IMP-GMP specific 5'-nucleotidase
A
470Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)N/A
Find proteins for Q5ZZB6 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
Go to UniProtKB:  Q5ZZB6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.222 
  • Space Group: I 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 154.089α = 90.00
b = 154.089β = 90.00
c = 191.232γ = 90.00
Software Package:
Software NamePurpose
ADSCdata collection
HKL-2000data reduction
COMOphasing
HKL-2000data scaling
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-10-10
    Type: Initial release
  • Version 1.1: 2014-03-05
    Type: Database references, Derived calculations
  • Version 1.2: 2014-04-02
    Type: Database references