4G3Y

Crystal structure of TNF-alpha in complex with Infliximab Fab fragment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for treating tumor necrosis factor alpha (TNFalpha)-associated diseases with the therapeutic antibody infliximab

Liang, S.Y.Dai, J.X.Hou, S.Su, L.Zhang, D.Guo, H.Hu, S.Wang, H.Rao, Z.Guo, Y.J.Lou, Z.Y.

(2013) J.Biol.Chem. 288: 13799-13807

  • DOI: 10.1074/jbc.M112.433961

  • PubMed Abstract: 
  • Although infliximab has high efficacy in treating TNFα-associated diseases, the epitope on TNFα remains unclear.

    Although infliximab has high efficacy in treating TNFα-associated diseases, the epitope on TNFα remains unclear.


    Organizational Affiliation

    Laboratory of Structural Biology and Ministry of Education Laboratory of Protein Science, School of Medicine, Tsinghua University, Beijing 100084, China.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
infliximab Fab L
L
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
infliximab Fab H
H
226N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Tumor necrosis factor
C
157Homo sapiensMutation(s): 0 
Gene Names: TNF (TNFA, TNFSF2)
Find proteins for P01375 (Homo sapiens)
Go to Gene View: TNF
Go to UniProtKB:  P01375
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.189 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 153.663α = 90.00
b = 153.663β = 90.00
c = 99.279γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data scaling
ADSCdata collection
PHENIXmodel building
PHENIXrefinement
PHENIXphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-03-27
    Type: Initial release
  • Version 1.1: 2013-08-07
    Type: Database references