Download MendeleyStructural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides
Speir, J.A., Chen, Z., Reddy, V.S., Johnson, J.E.To be published.
4FTS
Crystal structure of the N363T mutant of the Flock House virus capsid
- PDB DOI: https://doi.org/10.2210/pdb4FTS/pdb
- Entry: 4FTS supersedes: 2Q23
- NDB: NA1926
- Classification: VIRUS
- Organism(s): Flock House virus, Spodoptera frugiperda
- Expression System: Spodoptera frugiperda
- Mutation(s): Yes
- Deposited: 2012-06-28 Released: 2012-08-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Work: 0.259
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Capsid protein alpha | A, B, C | 407 | Flock House virus | Mutation(s): 1 Gene Names: alpha, coat protein alpha EC: 3.4.23.44 |  |
UniProt | |||||
Find proteins for P12870 (Flock house virus) Explore P12870 Go to UniProtKB: P12870 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P12870 | ||||
Protein Feature ViewExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| Random cellular RNAs | D [auth R] | 15 | Spodoptera frugiperda |  | |
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | G [auth A], J [auth B], M [auth C] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | L [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| CA Query on CA | E [auth A], F [auth A], H [auth B], K [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | I [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Work: 0.259
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 326.04 | α = 90 |
| b = 326.04 | β = 90 |
| c = 770.15 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| GLRF | phasing |
Entry History
Deposition Data
- Released Date: 2012-08-01 Deposition Author(s): Speir, J.A., Chen, Z., Reddy, V.S., Johnson, J.E.
- This entry supersedes: 2Q23
Revision History (Full details and data files)
- Version 1.0: 2012-08-01
Type: Initial release
