4FSF

Crystal structure of Pseudomonas aeruginosa PBP3 complexed with compound 14


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.216 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Novel monobactams utilizing a siderophore uptake mechanism for the treatment of gram-negative infections.

Mitton-Fry, M.J.Arcari, J.T.Brown, M.F.Casavant, J.M.Finegan, S.M.Flanagan, M.E.Gao, H.George, D.M.Gerstenberger, B.S.Han, S.Hardink, J.R.Harris, T.M.Hoang, T.Huband, M.D.Irvine, R.Lall, M.S.Megan Lemmon, M.Li, C.Lin, J.McCurdy, S.P.Mueller, J.P.Mullins, L.Niosi, M.Noe, M.C.Pattavina, D.Penzien, J.Plummer, M.S.Risley, H.Schuff, B.P.Shanmugasundaram, V.Starr, J.T.Sun, J.Winton, J.Young, J.A.

(2012) Bioorg.Med.Chem.Lett. 22: 5989-5994

  • DOI: 10.1016/j.bmcl.2012.07.005

  • PubMed Abstract: 
  • Novel siderophore-linked monobactams with in vitro and in vivo anti-microbial activity against MDR Gram-negative pathogens are described.

    Novel siderophore-linked monobactams with in vitro and in vivo anti-microbial activity against MDR Gram-negative pathogens are described.


    Organizational Affiliation

    Medicinal Chemistry, Pfizer Worldwide Research and Development, Eastern Point Road, Groton, CT 06340, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Penicillin-binding protein 3
A
536Pseudomonas aeruginosaMutation(s): 0 
Gene Names: pbpB (ftsI, ftsI_1, ftsI_2)
EC: 3.4.16.4
Find proteins for Q51504 (Pseudomonas aeruginosa)
Go to UniProtKB:  Q51504
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
0W0
Query on 0W0

Download SDF File 
Download CCD File 
A
(4R,5S,8Z)-8-(2-amino-1,3-thiazol-4-yl)-1-[3-(1,5-dihydroxy-4-oxo-1,4-dihydropyridin-2-yl)-1,2-oxazol-5-yl]-5-formyl-11,11-dimethyl-1,7-dioxo-4-(sulfoamino)-10-oxa-2,6,9-triazadodec-8-en-12-oic acid
C22 H24 N8 O13 S2
OFOVQVNKWTUULV-NEEHKMPWSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.216 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 67.640α = 90.00
b = 82.723β = 90.00
c = 88.747γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
HKL-3000data reduction
SCALEPACKdata scaling
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2012-06-27 
  • Released Date: 2012-10-17 
  • Deposition Author(s): Han, S.

Revision History 

  • Version 1.0: 2012-10-17
    Type: Initial release